Transcript: TRDN-AS1:27

Basic information

LNCipedia transcript ID: TRDN-AS1:27 
LNCipedia gene ID: TRDN-AS1
RefSeq ID: NR_110844
Location (hg19): chr6:123760749-123792901
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2409 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110844; NR_110844.1
Alternative gene names: HRAT13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.5929 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:27 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:11
4.0 lnc-NKAIN2-1:11
4.1 lnc-NKAIN2-1:11
5.0 lnc-NKAIN2-1:11
5.1 TRDN-AS1:7
5.2 TRDN-AS1:27