Transcript: TRDN-AS1:28

Basic information

LNCipedia transcript ID: TRDN-AS1:28 
LNCipedia gene ID: TRDN-AS1
Location (hg19): chr6:123760757-123790075
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 297 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000418467.1; RP11-532N4.2-003; OTTHUMT00000042049.1
Alternative gene names: ENSG00000235535.1; RP11-532N4.2; OTTHUMG00000015496.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -589.3607 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:28 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:1
4.0 lnc-NKAIN2-1:1
4.1 lnc-NKAIN2-1:1
5.0 lnc-NKAIN2-1:1
5.1 TRDN-AS1:8
5.2 TRDN-AS1:28