Transcript: TRDN-AS1:32

Basic information

LNCipedia transcript ID: TRDN-AS1:32 
HGNC Gene Symbol: TRDN-AS1    
HGNC Full Gene Name: TRDN antisense RNA 1
Ensembl Gene ID: ENSG00000235535
Ensembl Transcript ID: ENST00000589182
Location (hg19): chr6:123760823-123791095
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 641 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000589182.1; ENST00000589182.5
Alternative gene names: ENSG00000235535.3; RP11-532N4.2; ENSG00000235535.7; AL445259.1; TRDN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -284.6993 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRDN-AS1:32 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN2-1:9
4.0 lnc-NKAIN2-1:9
4.1 lnc-NKAIN2-1:9
5.0 lnc-NKAIN2-1:9
5.1 TRDN-AS1:12
5.2 TRDN-AS1:32