Transcript: TRERNA1:1

Basic information

LNCipedia transcript ID: TRERNA1:1 
LNCipedia gene ID: TRERNA1
RefSeq ID: NR_051976
Location (hg19): chr20:48657244-48658166
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT080252; NR_051976; NR_051976.1
Alternative gene names: ncRNA-a7; treRNA; TRERNA1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0172 non-coding 
CPAT coding probability 16.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRERNA1:1 no no no no

Available literature

  1. Wang (2015), miR-190a inhibits epithelial-mesenchymal transition of hepatoma cells via targeting the long non-coding RNA treRNA., FEBS Lett.
  2. Gumireddy (2013), Identification of a long non-coding RNA-associated RNP complex regulating metastasis at the translational step., EMBO J.
  3. Ørom (2010), Long noncoding RNAs with enhancer-like function in human cells., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM189-UBE2V1-1:2
4.0 TRERNA1:1
4.1 TRERNA1:1
5.0 TRERNA1:1
5.1 TRERNA1:1
5.2 TRERNA1:1