Transcript: TRHDE-AS1:9

Basic information

LNCipedia transcript ID: TRHDE-AS1:9 
LNCipedia gene ID: TRHDE-AS1
Location (hg19): chr12:72647293-72653223
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2320 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020842; NONHSAT029460
Alternative gene names: XLOC_010128; linc-ZFC3H1-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7521 non-coding 
CPAT coding probability 3.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRHDE-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-2:5
3.1 lnc-ZFC3H1-6:5
4.0 TRHDE-AS1:9
4.1 TRHDE-AS1:9
5.0 TRHDE-AS1:9
5.1 TRHDE-AS1:9
5.2 TRHDE-AS1:9