Transcript: TRIM52-AS1:11

Basic information

LNCipedia transcript ID: TRIM52-AS1:11 
LNCipedia gene ID: TRIM52-AS1
RefSeq ID: NR_102762
Location (hg19): chr5:180688213-180699308
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 682 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT105942; NR_102762; NR_102762.1
Alternative gene names: ; TRIM52-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.7237 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:11 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM41-2:11
4.0 TRIM52-AS1:11
4.1 TRIM52-AS1:11
5.0 TRIM52-AS1:11
5.1 TRIM52-AS1:11
5.2 TRIM52-AS1:11