Transcript: TRIM52-AS1:19

Basic information

LNCipedia transcript ID: TRIM52-AS1:19 
LNCipedia gene ID: TRIM52-AS1
Location (hg19): chr5:180694825-180695840
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1036 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_26918_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.7077 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:19 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM41-2:16
4.0 TRIM52-AS1:19
4.1 TRIM52-AS1:19
5.0 TRIM52-AS1:19
5.1 TRIM52-AS1:19
5.2 TRIM52-AS1:19