Transcript: TRIM52-AS1:31

Basic information

LNCipedia transcript ID: TRIM52-AS1:31 
LNCipedia gene ID: TRIM52-AS1
Location (hg19): chr5:180688214-180691859
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1118 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248275.1|FTMT21900002752.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.8366 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:31 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TRIM52-AS1:31
5.0 TRIM52-AS1:31
5.1 TRIM52-AS1:31
5.2 TRIM52-AS1:31