Transcript: TRIM52-AS1:36

Basic information

LNCipedia transcript ID: TRIM52-AS1:36 
LNCipedia gene ID: TRIM52-AS1
RefSeq ID: NR_102761
Location (hg19): chr5:180688213-180691568
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 828 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_102761.1
Alternative gene names: TRIM52-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -13.6192 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRIM52-AS1:36 no no no no

Available literature

  1. Liu (2016), Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 TRIM52-AS1:36
5.1 TRIM52-AS1:36
5.2 TRIM52-AS1:36