Transcript: TTTY10:1

Basic information

LNCipedia transcript ID: TTTY10:1 
HGNC Gene Symbol: TTTY10    
HGNC Full Gene Name: testis-specific transcript, Y-linked 10
Ensembl Gene ID: ENSG00000229236
Ensembl Transcript ID: ENST00000455084
RefSeq ID: NR_001542
Location (hg19): chrY:22627554-22681114
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1628 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000455084; ENST00000455084.1; TTTY10-001; OTTHUMT00000088634.1; NONHSAT139635; NR_001542; NR_001542.1
Alternative gene names: ENSG00000229236; TTTY10; ENSG00000229236.1; OTTHUMG00000036431.2; NCRNA00133


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.5935 non-coding 
CPAT coding probability 16.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY10:1 no no no no

Available literature

  1. Zhu (2017), Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis., World J Surg Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM5D-1:1
3.1 lnc-KDM5D-3:1
4.0 TTTY10:1
4.1 TTTY10:1
5.0 TTTY10:1
5.1 TTTY10:1
5.2 TTTY10:1