Transcript: TTTY18:2

Basic information

LNCipedia transcript ID: TTTY18:2 
HGNC Gene Symbol: TTTY18    
HGNC Full Gene Name: testis-specific transcript, Y-linked 18
Ensembl Gene ID: ENSG00000233699
Ensembl Transcript ID: ENST00000438677
RefSeq ID: NR_001550
Location (hg19): chrY:8551411-8551919
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 221 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017584; ENST00000438677; ENST00000438677.1; TTTY18-001; OTTHUMT00000098862.1; NR_001550; NR_001550.1
Alternative gene names: XLOC_008316; linc-AMELY-1; ENSG00000233699; TTTY18; ENSG00000233699.1; OTTHUMG00000041267.1; NCRNA00143


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5817 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY18:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006156.2-3:1
3.1 lnc-AC006156.2-7:1
4.0 TTTY18:2
4.1 TTTY18:2
5.0 TTTY18:2
5.1 TTTY18:2
5.2 TTTY18:2