Transcript: TTTY22:1

Basic information

LNCipedia transcript ID: TTTY22:1 
HGNC Gene Symbol: TTTY22    
HGNC Full Gene Name: testis-specific transcript, Y-linked 22
Ensembl Gene ID: ENSG00000224075
Ensembl Transcript ID: ENST00000445253
RefSeq ID: NR_001539
Location (hg19): chrY:9638762-9650854
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 427 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017577; ENST00000445253; ENST00000445253.1; TTTY22-001; OTTHUMT00000099590.1; NR_001539; NR_001539.1
Alternative gene names: XLOC_008291; linc-USP9Y-5; ENSG00000224075; TTTY22; ENSG00000224075.1; OTTHUMG00000041601.1; NCRNA00147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY22:1 no no no no

Available literature

  1. Shi (2018), Copy number variation arising from gene conversion on the human Y chromosome., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPY10-3:1
3.1 lnc-TSPY10-3:1
4.0 TTTY22:1
4.1 TTTY22:1
5.0 TTTY22:1
5.1 TTTY22:1
5.2 TTTY22:1