Transcript: TTTY23:1

Basic information

LNCipedia transcript ID: TTTY23:1 
HGNC Gene Symbol: TTTY23    
HGNC Full Gene Name: testis-specific transcript, Y-linked 23
Ensembl Gene ID: ENSG00000239225
Ensembl Transcript ID: ENST00000452889
RefSeq ID: NR_001540
Location (hg19): chrY:9748407-9749571
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 512 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000452889; ENST00000452889.1; TTTY23-001; OTTHUMT00000106567.1; NONHSAT139431; NR_003593; NR_001540; NR_001540.1
Alternative gene names: ENSG00000239225; TTTY23; ENSG00000239225.1; OTTHUMG00000046234.1; NCRNA00148


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.9934 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY23:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPY10-5:1
3.1 lnc-TSPY10-5:1
4.0 TTTY23:1
4.1 TTTY23:1
5.0 TTTY23:1
5.1 TTTY23:1
5.2 TTTY23:1