Transcript: TTTY4C:2

Basic information

LNCipedia transcript ID: TTTY4C:2 
HGNC Gene Symbol: TTTY4C    
HGNC Full Gene Name: testis-specific transcript, Y-linked 4C
Ensembl Gene ID: ENSG00000228296
Ensembl Transcript ID: ENST00000456123
Location (hg19): chrY:27209230-27246039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1346 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456123; ENST00000456123.1; TTTY4C-001; OTTHUMT00000104945.1; NONHSAT139758; NR_001525; NR_002178; NR_002177
Alternative gene names: ENSG00000228296; TTTY4C; ENSG00000228296.1; OTTHUMG00000045200.1; LINC00125


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.8624 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TTTY4C:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BPY2C-1:2
3.1 lnc-BPY2C-1:2
4.0 TTTY4C:2
4.1 TTTY4C:2
5.0 TTTY4C:2
5.1 TTTY4C:2
5.2 TTTY4C:2