Transcript: TUSC8:13

Basic information

LNCipedia transcript ID: TUSC8:13 
LNCipedia gene ID: TUSC8
Location (hg19): chr13:44971861-44980109
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6869 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000237361.2|MICT00000093820.1
Alternative gene names: XLOC_010588


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.6659 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:13 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TUSC8:13
5.0 TUSC8:13
5.1 TUSC8:13
5.2 TUSC8:13