Transcript: TUSC8:5

Basic information

LNCipedia transcript ID: TUSC8:5 
LNCipedia gene ID: TUSC8
Location (hg19): chr13:44974388-44980021
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 976 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00021511
Alternative gene names: XLOC_010588; linc-CCDC122-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.7508 non-coding 
CPAT coding probability 4.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TUSC8:5 no no no no

Available literature

  1. Liao (2014), Low expression of long noncoding XLOC_010588 indicates a poor prognosis and promotes proliferation through upregulation of c-Myc in cervical cancer., Gynecol. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D1-1:2
3.1 lnc-TSC22D1-1:2
4.0 TUSC8:5
4.1 TUSC8:5
5.0 TUSC8:5
5.1 TUSC8:5
5.2 TUSC8:5