Transcript: UBA6-AS1:18

Basic information

LNCipedia transcript ID: UBA6-AS1:18 
HGNC Gene Symbol: UBA6-AS1    
HGNC Full Gene Name: UBA6 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000248049
Ensembl Transcript ID: ENST00000499180
Location (hg19): chr4:68928780-68945944
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499180; ENST00000499180.2; RP11-453E17.1-006; OTTHUMT00000362388.1; NONHSAT096723
Alternative gene names: ENSG00000248049; RP11-453E17.1; ENSG00000248049.2; OTTHUMG00000160769.4; UBA6-AS1; ENSG00000248049.6; LOC550112


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.2585 non-coding 
CPAT coding probability 1.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UBA6-AS1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-1:6
3.1 lnc-TMPRSS11E-1:6
4.0 UBA6-AS1:18
4.1 UBA6-AS1:18
5.0 UBA6-AS1:18
5.1 UBA6-AS1:18
5.2 UBA6-AS1:18