Transcript: UBA6-AS1:9

Basic information

LNCipedia transcript ID: UBA6-AS1:9 
HGNC Gene Symbol: UBA6-AS1    
HGNC Full Gene Name: UBA6 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000248049
Ensembl Transcript ID: ENST00000506606
Location (hg19): chr4:68567051-68588220
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2233 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506606; ENST00000506606.1; RP11-453E17.1-001; OTTHUMT00000362198.2
Alternative gene names: ENSG00000248049; RP11-453E17.1; ENSG00000248049.2; OTTHUMG00000160769.4; UBA6-AS1; ENSG00000248049.6; LOC550112


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.0354 non-coding 
CPAT coding probability 8.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UBA6-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-1:2
3.1 lnc-TMPRSS11E-1:2
4.0 UBA6-AS1:9
4.1 UBA6-AS1:9
5.0 UBA6-AS1:9
5.1 UBA6-AS1:9
5.2 UBA6-AS1:9