Transcript: UGDH-AS1:5

Basic information

LNCipedia transcript ID: UGDH-AS1:5 
LNCipedia gene ID: UGDH-AS1
Location (hg19): chr4:39537018-39538964
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1947 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1040:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.9259 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UGDH-AS1:5 no no no no

Available literature

  1. Qu (2018), Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration., Mol Med Rep
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 UGDH-AS1:5
4.1 UGDH-AS1:5
5.0 UGDH-AS1:5
5.1 UGDH-AS1:5
5.2 UGDH-AS1:5