Transcript: UGDH-AS1:6

Basic information

LNCipedia transcript ID: UGDH-AS1:6 
LNCipedia gene ID: UGDH-AS1
Location (hg19): chr4:39549456-39551432
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 608 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000412595.3; RP11-472B18.2-001; OTTHUMT00000360986.2; NONHSAT096093
Alternative gene names: ENSG00000238206.3; RP11-472B18.2; OTTHUMG00000160538.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0171 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UGDH-AS1:6 yes no no no

Available literature

  1. Qu (2018), Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration., Mol Med Rep
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIAS-1:1
4.0 UGDH-AS1:6
4.1 UGDH-AS1:6
5.0 UGDH-AS1:6
5.1 UGDH-AS1:6
5.2 UGDH-AS1:6