Transcript: UGDH-AS1:7

Basic information

LNCipedia transcript ID: UGDH-AS1:7 
LNCipedia gene ID: UGDH-AS1
Location (hg19): chr4:39529351-39535814
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2834 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249348.1|FTMT21500007450.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.7725 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
UGDH-AS1:7 yes no no no

Available literature

  1. Qu (2018), Comprehensive evaluation of differential lncRNA and gene expression in patients with intervertebral disc degeneration., Mol Med Rep
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 UGDH-AS1:7
5.0 UGDH-AS1:7
5.1 UGDH-AS1:7
5.2 UGDH-AS1:7