Transcript: USP12-AS2:1

Basic information

LNCipedia transcript ID: USP12-AS2:1 
HGNC Gene Symbol: USP12-AS2    
HGNC Full Gene Name: USP12 antisense RNA 2 (head to head)
Ensembl Gene ID: ENSG00000230641
Ensembl Transcript ID: ENST00000452222
Location (hg19): chr13:27746396-27757135
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 279 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021532; ENST00000452222.1; USP12-AS2-001; OTTHUMT00000044268.1; NONHSAT032635
Alternative gene names: XLOC_010323; linc-RPL21-1; ENSG00000230641.1; USP12-AS2; OTTHUMG00000016628.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6783 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP12-AS2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPL21-1:1
3.1 lnc-RPL21-1:1
4.0 USP12-AS2:1
4.1 USP12-AS2:1
5.0 USP12-AS2:1
5.1 USP12-AS2:1
5.2 USP12-AS2:1