Transcript: USP27X-AS1:2

Basic information

LNCipedia transcript ID: USP27X-AS1:2 
LNCipedia gene ID: USP27X-AS1
Location (hg19): chrX:49641892-49643844
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1610 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000437322; ENST00000437322.1; AF238380.5-001; OTTHUMT00000060838.1
Alternative gene names: ENSG00000234390; AF238380.5; ENSG00000234390.3; OTTHUMG00000024154.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.7744 non-coding 
CPAT coding probability 44.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
USP27X-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAGE1-1:1
3.1 lnc-PAGE1-1:1
4.0 USP27X-AS1:2
4.1 USP27X-AS1:2
5.0 USP27X-AS1:2
5.1 USP27X-AS1:2
5.2 USP27X-AS1:2