Transcript: USP3-AS1:4

Basic information

LNCipedia transcript ID: USP3-AS1:4 
LNCipedia gene ID: USP3-AS1
RefSeq ID: NR_034080
Location (hg19): chr15:63879909-63893026
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1722 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT046622; NR_034080; NR_034080.1
Alternative gene names: ; USP3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 62.0826 coding 
CPAT coding probability 46.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
USP3-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HERC1-1:14
4.0 USP3-AS1:4
4.1 USP3-AS1:4
5.0 USP3-AS1:4
5.1 USP3-AS1:4
5.2 USP3-AS1:4