Transcript: USP30-AS1:2

Basic information

LNCipedia transcript ID: USP30-AS1:2 
LNCipedia gene ID: USP30-AS1
RefSeq ID: NR_038996
Location (hg19): chr12:109489846-109491770
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 978 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038996; NR_038996.1
Alternative gene names: ; USP30-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 25.1513 non-coding 
CPAT coding probability 23.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP30-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SVOP-2:3
4.0 USP30-AS1:2
4.1 USP30-AS1:2
5.0 USP30-AS1:2
5.1 USP30-AS1:2
5.2 USP30-AS1:2