Transcript: USP46-AS1:2

Basic information

LNCipedia transcript ID: USP46-AS1:2 
HGNC Gene Symbol: USP46-AS1    
HGNC Full Gene Name: USP46 antisense RNA 1
Ensembl Gene ID: ENSG00000248866
Ensembl Transcript ID: ENST00000503051
Location (hg19): chr4:53525573-53527835
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1048 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000503051.1; USP46-AS1-001; OTTHUMT00000361515.1
Alternative gene names: ENSG00000248866.1; USP46-AS1; OTTHUMG00000160639.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.3731 non-coding 
CPAT coding probability 6.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
USP46-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASL11B-5:1
4.0 USP46-AS1:2
4.1 USP46-AS1:2
5.0 USP46-AS1:2
5.1 USP46-AS1:2
5.2 USP46-AS1:2