Transcript: VIM-AS1:18

Basic information

LNCipedia transcript ID: VIM-AS1:18 
LNCipedia gene ID: VIM-AS1
Location (hg19): chr10:17201153-17216669
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 335 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT011604
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.096 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VIM-AS1:18 yes no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CUBN-2:4
4.0 lnc-TRDMT1-2:7
4.1 VIM-AS1:18
5.0 VIM-AS1:18
5.1 VIM-AS1:18
5.2 VIM-AS1:18