Transcript: VIM-AS1:2

Basic information

LNCipedia transcript ID: VIM-AS1:2 
LNCipedia gene ID: VIM-AS1
RefSeq ID: NR_108061
Location (hg19): chr10:17256238-17271984
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1875 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108061; NR_108061.1
Alternative gene names: ; VIM-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 95.8027 coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
VIM-AS1:2 no no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRDMT1-1:2
4.0 VIM-AS1:2
4.1 VIM-AS1:2
5.0 VIM-AS1:2
5.1 VIM-AS1:2
5.2 VIM-AS1:2