Transcript: VIM-AS1:4

Basic information

LNCipedia transcript ID: VIM-AS1:4 
LNCipedia gene ID: VIM-AS1
Location (hg19): chr10:17256246-17268906
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1278 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA187:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -288.6482 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VIM-AS1:4 no no no no

Available literature

  1. Rezanejad Bardaji (2018), Long noncoding RNA VIM-AS1 promotes colorectal cancer progression and metastasis by inducing EMT., Eur. J. Cell Biol.
  2. Sun (2017), Identification of long non-coding RNAs biomarkers associated with progression of endometrial carcinoma and patient outcomes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 VIM-AS1:4
4.1 VIM-AS1:4
5.0 VIM-AS1:4
5.1 VIM-AS1:4
5.2 VIM-AS1:4