Transcript: VLDLR-AS1:12

Basic information

LNCipedia transcript ID: VLDLR-AS1:12 
LNCipedia gene ID: VLDLR-AS1
Location (hg19): chr9:2423837-2427978
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4127 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT129995
Alternative gene names: ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.2297 non-coding 
CPAT coding probability 3.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:12 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-1:11
4.0 VLDLR-AS1:12
4.1 VLDLR-AS1:12
5.0 VLDLR-AS1:12
5.1 VLDLR-AS1:12
5.2 VLDLR-AS1:12