Transcript: VLDLR-AS1:7

Basic information

LNCipedia transcript ID: VLDLR-AS1:7 
HGNC Gene Symbol: VLDLR-AS1    
HGNC Full Gene Name: VLDLR antisense RNA 1
Ensembl Gene ID: ENSG00000236404
Ensembl Transcript ID: ENST00000416826
Location (hg19): chr9:2422702-2621413
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3167 bp
Exons: 11
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT129994; ENST00000416826.2; ENST00000416826.6
Alternative gene names: ENSG00000236404.4; RP11-125B21.2; ENSG00000236404.8; VLDLR-AS1; ; lincRNA-VLDLR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9919 non-coding 
CPAT coding probability 14.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VLDLR-AS1:7 no no no no

Available literature

  1. Takahashi (2014), Involvement of extracellular vesicle long noncoding RNA (linc-VLDLR) in tumor cell responses to chemotherapy., Mol. Cancer Res.
  2. Loewer (2010), Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0020-1:8
4.0 VLDLR-AS1:7
4.1 VLDLR-AS1:7
5.0 VLDLR-AS1:7
5.1 VLDLR-AS1:7
5.2 VLDLR-AS1:7