Transcript: VSTM2A-OT1:1

Basic information

LNCipedia transcript ID: VSTM2A-OT1:1 
HGNC Gene Symbol: VSTM2A-OT1    
HGNC Full Gene Name: VSTM2A overlapping transcript 1
Ensembl Gene ID: ENSG00000224223
Ensembl Transcript ID: ENST00000456049
RefSeq ID: NR_038994
Location (hg19): chr7:54624663-54639419
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 3031 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000456049.1; GS1-18A18.1-001; OTTHUMT00000342925.1; NONHSAT120652; NR_038994; NR_038994.1
Alternative gene names: ENSG00000224223.1; GS1-18A18.1; OTTHUMG00000156070.1; VSTM2A-OT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.8291 non-coding 
CPAT coding probability 5.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
VSTM2A-OT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VSTM2A-1:1
4.0 VSTM2A-OT1:1
4.1 VSTM2A-OT1:1
5.0 VSTM2A-OT1:1
5.1 VSTM2A-OT1:1
5.2 VSTM2A-OT1:1