Transcript: WAC-AS1:15

Basic information

LNCipedia transcript ID: WAC-AS1:15 
LNCipedia gene ID: WAC-AS1
Location (hg19): chr10:28811581-28821632
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2283 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254635.1|ENST00000527986.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.2107 non-coding 
CPAT coding probability 15.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WAC-AS1:15 yes no no no

Available literature

  1. van Heesch (2014), Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes., Genome Biol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 WAC-AS1:15
5.0 WAC-AS1:15
5.1 WAC-AS1:15
5.2 WAC-AS1:15