Transcript: WASIR2:5

Basic information

LNCipedia transcript ID: WASIR2:5 
HGNC Gene Symbol: WASIR2    
HGNC Full Gene Name: WASH and IL9R antisense RNA 2
Ensembl Gene ID: ENSG00000231439
Ensembl Transcript ID: ENST00000527434
Location (hg19): chr16:72910-75123
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1054 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527434.1; WASIR2-001; OTTHUMT00000134191.1
Alternative gene names: ENSG00000231439.3; WASIR2; OTTHUMG00000060721.1; ENSG00000231439.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.5881 coding 
CPAT coding probability 7.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
WASIR2:5 no no no no

Available literature

  1. Daniels (2001), Sequence, structure and pathology of the fully annotated terminal 2 Mb of the short arm of human chromosome 16., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNRNP25-1:2
4.0 WASIR2:5
4.1 WASIR2:5
5.0 WASIR2:5
5.1 WASIR2:5
5.2 WASIR2:5