Transcript: WDFY3-AS2:19

Basic information

LNCipedia transcript ID: WDFY3-AS2:19 
LNCipedia gene ID: WDFY3-AS2
Location (hg19): chr4:85886804-85929972
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3119 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000180769.4|ENCT00000320980.1
Alternative gene names: FBI4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.3329 non-coding 
CPAT coding probability 4.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WDFY3-AS2:19 yes no no no

Available literature

  1. Kehrer-Sawatzki (2005), Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes)., Hum. Mutat.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 WDFY3-AS2:19
5.0 WDFY3-AS2:19
5.1 WDFY3-AS2:19
5.2 WDFY3-AS2:19