Transcript: WDFY3-AS2:2

Basic information

LNCipedia transcript ID: WDFY3-AS2:2 
LNCipedia gene ID: WDFY3-AS2
Location (hg19): chr4:85886838-85929897
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3162 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1048:1
Alternative gene names: FBI4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -45.3329 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WDFY3-AS2:2 yes no no no

Available literature

  1. Kehrer-Sawatzki (2005), Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes)., Hum. Mutat.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 WDFY3-AS2:2
4.1 WDFY3-AS2:2
5.0 WDFY3-AS2:2
5.1 WDFY3-AS2:2
5.2 WDFY3-AS2:2