Transcript: WDFY3-AS2:4

Basic information

LNCipedia transcript ID: WDFY3-AS2:4 
LNCipedia gene ID: WDFY3-AS2
Location (hg19): chr4:85887538-85932430
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6434 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000451762; ENST00000451762.1; WDFY3-AS2-001; OTTHUMT00000280506.1; NONHSAT097252
Alternative gene names: ENSG00000180769; NCRNA00247; ENSG00000180769.4; WDFY3-AS2; OTTHUMG00000141281.2; FBI4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.5973 non-coding 
CPAT coding probability 10.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
WDFY3-AS2:4 yes no no no

Available literature

  1. Kehrer-Sawatzki (2005), Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes)., Hum. Mutat.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDS1-1:1
3.1 lnc-CDS1-2:1
4.0 WDFY3-AS2:4
4.1 WDFY3-AS2:4
5.0 WDFY3-AS2:4
5.1 WDFY3-AS2:4
5.2 WDFY3-AS2:4