Transcript: XIST:22

Basic information

LNCipedia transcript ID: XIST:22 
HGNC Gene Symbol: XIST    
HGNC Full Gene Name: X inactive specific transcript
Ensembl Gene ID: ENSG00000229807
Ensembl Transcript ID: ENST00000421322
Location (hg19): chrX:73040488-73046641
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421322; TCONS_00017071; ENST00000421322.1; XIST-003; OTTHUMT00000057241.1; NONHSAT147735
Alternative gene names: ENSG00000229807; XLOC_008185; linc-NAP1L2-4; XIST; ENSG00000229807.3; OTTHUMG00000021839.3; ENSG00000229807.5; ENSG00000229807.9; NCRNA00001; DXS1089; swd66; LINC00001; ENSG00000229807.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.9871 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
XIST:22 no no no no

Available literature

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  77. Huang (2014), Urinary Xist is a potential biomarker for membranous nephropathy., Biochem. Biophys. Res. Commun.
  78. Ishizuka (2014), Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF1., Genes Cells
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  203. Chaumeil (2011), Evolution from XIST-independent to XIST-controlled X-chromosome inactivation: epigenetic modifications in distantly related mammals., PLoS ONE
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  206. Duszczyk (2011), The Xist RNA A-repeat comprises a novel AUCG tetraloop fold and a platform for multimerization., RNA
  207. Hasegawa (2011), Revisiting the function of nuclear scaffold/matrix binding proteins in X chromosome inactivation., RNA Biol
  208. Horvath (2011), Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus., Genome Res.
  209. Jeon (2011), YY1 tethers Xist RNA to the inactive X nucleation center., Cell
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LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAP1L2-1:13
3.1 lnc-NAP1L2-1:13
4.0 XIST:22
4.1 XIST:22
5.0 XIST:22
5.1 XIST:22
5.2 XIST:22