Transcript: ZBED5-AS1:4

Basic information

LNCipedia transcript ID: ZBED5-AS1:4 
LNCipedia gene ID: ZBED5-AS1
RefSeq ID: NR_034137
Location (hg19): chr11:10879764-10900823
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1113 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019073; NR_034137; NR_034137.1
Alternative gene names: XLOC_009065; linc-USP47-3; ; ZBED5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.6377 non-coding 
CPAT coding probability 9.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZBED5-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTR9-3:1
3.1 lnc-CTR9-3:1
4.0 ZBED5-AS1:4
4.1 ZBED5-AS1:4
5.0 ZBED5-AS1:4
5.1 ZBED5-AS1:4
5.2 ZBED5-AS1:4