Transcript: ZEB2-AS1:12

Basic information

LNCipedia transcript ID: ZEB2-AS1:12 
HGNC Gene Symbol: ZEB2-AS1    
HGNC Full Gene Name: ZEB2 antisense RNA 1
Ensembl Gene ID: ENSG00000238057
Ensembl Transcript ID: ENST00000609819
Location (hg19): chr2:145276916-145277948
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 446 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609819.1; ENST00000609819.5
Alternative gene names: ENSG00000238057.4; ZEB2-AS1; ENSG00000238057.8; ZEB2NAT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1924 non-coding 
CPAT coding probability 8.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZEB2-AS1:12 yes no no no

Available literature

  1. Zhuang (2015), TGFβ1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT., Sci Rep
  2. Beltran (2008), A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP15-3:13
4.0 ZEB2-AS1:12
4.1 ZEB2-AS1:12
5.0 ZEB2-AS1:12
5.1 ZEB2-AS1:12
5.2 ZEB2-AS1:12