Transcript: ZEB2-AS1:6

Basic information

LNCipedia transcript ID: ZEB2-AS1:6 
HGNC Gene Symbol: ZEB2-AS1    
HGNC Full Gene Name: ZEB2 antisense RNA 1
Ensembl Gene ID: ENSG00000238057
Ensembl Transcript ID: ENST00000602006
Location (hg19): chr2:145275973-145278389
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT074773; ENST00000602006.1; ENST00000602006.5
Alternative gene names: ENSG00000238057.4; ZEB2-AS1; ENSG00000238057.8; ZEB2NAT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.4731 non-coding 
CPAT coding probability 6.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZEB2-AS1:6 yes no no no

Available literature

  1. Zhuang (2015), TGFβ1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT., Sci Rep
  2. Beltran (2008), A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP15-3:8
4.0 ZEB2-AS1:6
4.1 ZEB2-AS1:6
5.0 ZEB2-AS1:6
5.1 ZEB2-AS1:6
5.2 ZEB2-AS1:6