Transcript: ZEB2-AS1:9

Basic information

LNCipedia transcript ID: ZEB2-AS1:9 
LNCipedia gene ID: ZEB2-AS1
Location (hg19): chr2:145275982-145278683
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1187 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT074775
Alternative gene names: ZEB2NAT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1924 non-coding 
CPAT coding probability 19.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZEB2-AS1:9 yes no no no

Available literature

  1. Zhuang (2015), TGFβ1 secreted by cancer-associated fibroblasts induces epithelial-mesenchymal transition of bladder cancer cells through lncRNA-ZEB2NAT., Sci Rep
  2. Beltran (2008), A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP15-3:10
4.0 ZEB2-AS1:9
4.1 ZEB2-AS1:9
5.0 ZEB2-AS1:9
5.1 ZEB2-AS1:9
5.2 ZEB2-AS1:9