Transcript: ZFHX2-AS1:29

Basic information

LNCipedia transcript ID: ZFHX2-AS1:29 
HGNC Gene Symbol: ZFHX2-AS1    
HGNC Full Gene Name: ZFHX2 antisense RNA 1
Ensembl Gene ID: ENSG00000157306
Ensembl Transcript ID: ENST00000556613
Location (hg19): chr14:23981981-23983762
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 538 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556613.1; RP11-66N24.4-004; OTTHUMT00000413828.1; NONHSAT035906
Alternative gene names: ENSG00000157306.10; RP11-66N24.4; OTTHUMG00000171505.3; ENSG00000157306.14; ZFHX2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.4272 non-coding 
CPAT coding probability 11.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZFHX2-AS1:29 no no no no

Available literature

  1. Komine (2006), Novel transcription factor zfh-5 is negatively regulated by its own antisense RNA in mouse brain., Mol. Cell. Neurosci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THTPA-2:2
4.0 lnc-THTPA-2:2
4.1 lnc-THTPA-2:2
5.0 lnc-THTPA-2:2
5.1 ZFHX2-AS1:4
5.2 ZFHX2-AS1:29