Transcript: ZKSCAN2-DT:11

Basic information

LNCipedia transcript ID: ZKSCAN2-DT:11 
LNCipedia gene ID: ZKSCAN2-DT
Location (hg19): chr16:25268911-25295377
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 26370 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000026947.1|ENCT00000157449.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.6301 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZKSCAN2-DT:11 no no no no

Available literature

  1. Wen (2018), Up-regulation of CTD-2547G23.4 in hepatocellular carcinoma tissues and its prospective molecular regulatory mechanism: a novel qRT-PCR and bioinformatics analysis study., Cancer Cell Int.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AQP8-2:3
5.0 lnc-AQP8-2:3
5.1 ZKSCAN2-DT:3
5.2 ZKSCAN2-DT:11