Transcript: ZNF197-AS1:1

Basic information

LNCipedia transcript ID: ZNF197-AS1:1 
HGNC Gene Symbol: ZNF197-AS1    
HGNC Full Gene Name: ZNF197 antisense RNA 1
Ensembl Gene ID: ENSG00000233509
Ensembl Transcript ID: ENST00000447691
RefSeq ID: NR_046658
Location (hg19): chr3:44658620-44666289
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 623 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000447691.2; ZNF197-AS1-001; OTTHUMT00000343835.2; NONHSAT089365; NR_046658; NR_046658.1
Alternative gene names: ENSG00000233509.2; ZNF197-AS1; OTTHUMG00000156308.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.9306 non-coding 
CPAT coding probability 2.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF197-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF852-1:1
4.0 ZNF197-AS1:1
4.1 ZNF197-AS1:1
5.0 ZNF197-AS1:1
5.1 ZNF197-AS1:1
5.2 ZNF197-AS1:1