Transcript: ZNF436-AS1:2

Basic information

LNCipedia transcript ID: ZNF436-AS1:2 
HGNC Gene Symbol: ZNF436-AS1    
HGNC Full Gene Name: ZNF436 antisense RNA 1
Ensembl Gene ID: ENSG00000249087
Ensembl Transcript ID: ENST00000458053
Location (hg19): chr1:23695490-23698276
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 375 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT001515; ENST00000458053.4
Alternative gene names: ENSG00000249087.6; ZNF436-AS1; FLJ90508


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.4865 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF436-AS1:2 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf213-1:2
4.0 ZNF436-AS1:2
4.1 ZNF436-AS1:2
5.0 ZNF436-AS1:2
5.1 ZNF436-AS1:2
5.2 ZNF436-AS1:2