Transcript: lnc-A1CF-1:2

Basic information

LNCipedia transcript ID: lnc-A1CF-1:2 
LNCipedia gene ID: lnc-A1CF-1
RefSeq ID: NR_120678
Location (hg19): chr10:52822339-52828312
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 420 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_120678; NR_120678.1
Alternative gene names: LOC102724719


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -52.1309 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-A1CF-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-A1CF-1:2
4.0 lnc-A1CF-1:2
4.1 lnc-A1CF-1:2
5.0 lnc-A1CF-1:2
5.1 lnc-CSTF2T-4:2
5.2 lnc-A1CF-1:2