Transcript: lnc-AAGAB-1:40

Basic information

LNCipedia transcript ID: lnc-AAGAB-1:40 
LNCipedia gene ID: lnc-AAGAB-1
Ensembl Gene ID: ENSG00000259347
Ensembl Transcript ID: ENST00000560662
Location (hg19): chr15:67278706-67286525
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560662.2
Alternative gene names: ENSG00000259347.5; RP11-798K3.2; ENSG00000259347.6; AC087482.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -393.829 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AAGAB-1:40 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-342M21.2.1-1:18
4.1 lnc-RP11-342M21.2.1-1:18
5.0 lnc-RP11-342M21.2.1-1:18
5.1 lnc-AAGAB-1:19
5.2 lnc-AAGAB-1:40