Transcript: lnc-AAK1-6:1

Basic information

LNCipedia transcript ID: lnc-AAK1-6:1 
LNCipedia gene ID: lnc-AAK1-6
Ensembl Gene ID: ENSG00000231024
Ensembl Transcript ID: ENST00000415342
Location (hg19): chr2:69927324-69940979
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 420 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415342; ENST00000415342.1; AC092431.3-001; OTTHUMT00000327365.1; NONHSAT071356
Alternative gene names: ENSG00000231024; AC092431.3; ENSG00000231024.1; OTTHUMG00000152688.1; AC092431.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.2867 non-coding 
CPAT coding probability 5.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AAK1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AAK1-1:1
3.1 lnc-AAK1-1:1
4.0 lnc-AAK1-1:1
4.1 lnc-AAK1-1:1
5.0 lnc-AAK1-1:1
5.1 lnc-GKN2-14:1
5.2 lnc-AAK1-6:1