Transcript: lnc-AASDHPPT-1:5

Basic information

LNCipedia transcript ID: lnc-AASDHPPT-1:5 
LNCipedia gene ID: lnc-AASDHPPT-1
RefSeq ID: NR_120551
Location (hg19): chr11:106122134-106135632
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1754 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT023980; NR_120551; NR_120551.1
Alternative gene names: LOC101928535


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.1695 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AASDHPPT-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AASDHPPT-1:5
4.0 lnc-AASDHPPT-1:5
4.1 lnc-AASDHPPT-1:5
5.0 lnc-AASDHPPT-1:5
5.1 lnc-DYNC2H1-31:5
5.2 lnc-AASDHPPT-1:5